Re: provean: incompatible with cd-hit >= 4.8.1-4
- To: Andrius Merkys <merkys@debian.org>, Debian Med Project List <debian-med@lists.debian.org>
- Cc: 1042769@bugs.debian.org
- Subject: Re: provean: incompatible with cd-hit >= 4.8.1-4
- From: Andreas Tille <tille@debian.org>
- Date: Fri, 18 Aug 2023 07:41:12 +0200
- Message-id: <ZN8EeNdV7NJc/7Hb@an3as.eu>
- In-reply-to: <56fba515-994a-a8b5-71de-3f427493cf51@debian.org>
- References: <ZN3RAhSB8E5477R4@an3as.eu> <56fba515-994a-a8b5-71de-3f427493cf51@debian.org>
Hi Andrius,
trying to find more readers on Debian Med list to possibly reach some
cd-hit users.
Am Fri, Aug 18, 2023 at 07:01:08AM +0300 schrieb Andrius Merkys:
> Hi Andreas,
>
> On 2023-08-17 10:49, Andreas Tille wrote:
> > thanks for reporting this issue. You were mentioning you want to come
> > up with a patch. Since you seem to have dived into this issue deeper
> > I assume you will care for this bug. If not please clarify the status
> > (or may be set the "help" tag).
>
> I feel like working on it myself as I have a setup for reproducing it (it
> needs a version of NR database, ~100 GB) and I have located the approximate
> location in the code (cd-hit output parsing). It could help me a lot if
> someone knew the changes in cd-hit output since 4.8.1, though, as I am not a
> frequent user.
I'm not using cd-hit at all. If nobody might respond here asking upstream
might help.
Kind regards
Andreas.
--
http://fam-tille.de
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