* Package name : yanosim
Version : 0.1
Upstream Author : Matthew Parker
* URL :
https://github.com/bartongroup/yanosim* License : Expat
Programming Lang: Python
Description : Read simulator nanopore DRS datasets
It has three options:
1 yanosim model:
Creates an model of mismatches, insertions and deletions
based on an alignment of nanopore DRS reads to a
reference. Reads should be aligned to a transcriptome
i.e. without spliced alignment, using minimap2. They
should have the cs tag.
.
2 yanosim quantify:
Quantify the number of reads mapping to each
transcript in a reference, so that the right number
of reads can be simulated.
.
3 yanosim simulate
Given a model created using yanosim model, and
per-transcript read counts created using yanosim
simulate, simulate error-prone long-reads from the
given fasta file.
I take the responsibility to maintain this package.