Re: MAKER - genome annotation - we almost have it all
Le Thu, Jun 16, 2011 at 12:11:44PM +0200, Steffen Möller a écrit :
>
> surprise we don't have RepeatMasker.
Hi Steffen
RepeatMasker seems to need Tandem repeats finder
(http://tandem.bu.edu/trf/trf.html), which is apparently closed source. In the
worst case, one could make a wrapper à la flashplugin-nonfree…
For BioPerl, last year I have promised to the Perl team to split it between
libbio-perl-perl, that will containt the modules, and bioperl, that will
contain the rest.
http://lists.debian.org/debian-perl/2010/02/msg00074.html
If possible, I would like to take the opportunity of the new BioPerl upstream
release to do such ground work, but if I am being a bottleneck, this can be
postponed.
Cheers,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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