Hi-
Nice list.
This project is a container for a set of useful (to our group) tools
developed over the years. The intent was to release the more useful
ones individually -- as was done for leaff/sim4db -- but the time and/or
support was never quite there. The wiki page
http://kmer.sourceforge.net/wiki/index.php?Main_Page lists the most
useful tools. Unfortunately, there is also a lot of crap in there that
shouldn't be installed.
I can probably package up those tools -- ESTmapper, ATAC, and meryl --
without too much trouble. The meryl package will be the same bits that
are included in wgs-assembler/kmer now. Looking at what is built now,
there will still be some crap left over. wgs-assembler needs only the
libraries and header files. I'll drop a line when this gets done.
seagen/seatac are components of ESTmapper/ATAC (respectively) that
aren't useful standalone. tapper and trie are two (of many) tools that
failed to pan out.
Unrelated to kmer, wgs-assembler also needs several of the PacBio codes
(https://github.com/PacificBiosciences) to run a specific use case. I
don't have a list of what is required - I've never installed these
personally. Perhaps https://github.com/PacificBiosciences/SMRT-Analysis
will capture everything. That is, at least, their primary analysis
suite, if not the latest bits.
b