Hi,
I have modified git repo to fix the build.xml file. With the f2jutil, compil is ok for "missing" classes. There are still however other dependencies issues (I have put them in changelog)
Olivier
----- Mail transféré -----
> De: "Andreas Tille" <andreas@an3as.eu>
> À: "Olivier Sallou" <olivier.sallou@irisa.fr>, "Debian Med Packaging Team"
> <debian-med-packaging@lists.alioth.debian.org>
> Envoyé: Mardi 1 Septembre 2015 13:51:17
> Objet: Problems with libmtj-java and new version of beast-mcmc
>
> Hi Olivier,
>
> I have updated beast-mcmc to latest upstream version (in
> testing/unstable as well as jessie-backports). A local user stumbled upon
> a problem that is connected to the Debian packaged version of libmtj-java
> that does not contain all classes as the lib/mtj.jar[1] from upstream.
> The latter provides classes in
>
> org/netlib/util
>
> which are part of the Debian package libnetlib-java in
> /usr/share/java/netlib-java.jar. Unfortunately it seems that the Beast
> upstream found a newer version of netlib-java to include into mtj.jar
> than we have packaged for Debian.
>
> Exception in thread "Thread-1" java.lang.NoClassDefFoundError:
> org/netlib/util/intW
>
> Unfortunately I was not able to reproduce this problem with the example
> data sets inside Beast - feel free to ping me in private to reproduce
> this issue.
>
> The class org/netlib/util/intW is not part of the netlib version we have
> packaged for Debian. However, if I try to upgrade libnetlib-java for
> Debian (we are lagging several versions behind upstream since it was
> moved to Github[2]) I'm running into two types of trouble:
>
> 1. The latest version also does not have org/netlib/util/intW
> 2. I would need to change the packaging of libnetlib-java
> from ant to maven (and I was not very lucky with this in
> the past.
>
> Any idea how we could provide org/netlib/util/intW?
>
> Kind regards
>
> Andreas.
>
> [1] https://github.com/beast-dev/beast-mcmc/blob/master/lib/mtj.jar
> [2] https://github.com/fommil/netlib-java
>
> --
> http://fam-tille.de
>