Re: Jon says "thanks" ...
On Tue, Feb 09, 2016 at 06:50:51PM +0100, Andreas Tille wrote:
> Hi Jon,
>
> you are now faced with my habit to repost private mails to public
> mailing list if there is no privat but rather publicly interesting
> content in it. Please stick to the list since otherwise publicly
> relevant information will be dumped to private mailboxes which sucks.
> (And sorry for violating the netiquette.)
>
> On Tue, Feb 09, 2016 at 05:45:55PM +0100, jison@cbs.dtu.dk wrote:
> > ... for a real blast at the Sprint. I had a great time, and I think we did well.
>
> +1
> and thanks a lot for the support by DTU!
>
> > A quick question: how many biology packages in total does Debian Med hold?
>
> You can answer this question yourself: Run
>
> https://github.com/bio-tools/biotoolsConnect/blob/master/DebianMed/edam.sh
>
> and than
>
> $ grep -c "debian[ |]\+sid" edam.txt
> 476
>
> > And how many did we (me and you Steffen, and
> > others) annotate during the event - i.e. create an upstream edam.yaml (or whatever) for ?
>
> I need a fresh checkout but I think it is below 30.
To give an update here is a list of currently existing edam files in the
Debian Med repositories (Git+SVN):
$ find . -name "*.edam" | sort
./a/abacas.edam
./a/aegean.edam
./a/ampliconnoise.edam
./a/andi.edam
./a/anfo.edam
./a/aragorn.edam
./a/arden.edam
./a/artemis.edam
./b/barrnap.edam
./b/bowtie.edam
./c/clustalo.edam
./c/codonw.edam
./d/dialign.edam
./f/fastaq.edam
./f/fastqc.edam
./f/fastx-toolkit.edam
./f/filo.edam
./h/htslib.tabix.edam
./i/indelible.edam
./k/kissplice.edam
./k/kmc.edam
./l/ltrsift.edam
./m/miniasm.edam
./m/minimap.edam
./m/mothur.edam
./m/mummer.edam
./m/muscle.edam
./p/pbsim.edam
./p/picard-tools.edam
./q/qiime.edam
./s/snpomatic.edam
./s/snp-sites.edam
./s/sra-sdk.edam
./s/ssake.edam
./t/tantan.edam
./t/trimmomatic.edam
./u/uc-echo.edam
The exact number is 37 - so my estimation based on an older checkout
was wrong. Thanks to all those who worked on this
Andreas.
--
http://fam-tille.de
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