[GSoC] Phyml test issues
Hi Canberk,
I've uploaded maq even if the README.source is a bit short. You just
gave an URL to the large data collection - it would be better do
describe how exactly the example data were fetched.
I had another look into phyml since upstream suggested to stick to the
version currently in Debian and not upgrade to the latest upstream
version. When I run the test suite I get:
...
. 25 patterns found (out of a total of 120 sites).
. 39 sites without polymorphism (32.50%).
. Computing pairwise distances...
. Building BioNJ tree...
. Refining the tree...
== tree: ((((((tax2:0.01760499,(tax3:0.00282770,tax7:0.00000000):0.01154962):0.00381161,(tax1:0.02691160,tax5:0.00139365):0.00884779):0.01679485,tax6:0.00002904):0.04137812,tax10:0.00792930):0.02361075,tax9:0.12979682):0.93857376,tax4:0.00000000,tax8:0.96932108);
== b->num = 3 sum = -2.14748E+09 root ? 0
== Err. in file lk.c at line 3850 (function 'Pull_Scaling_Factors')
Can anybody reproduce this? Canberk, could you please try to check.
Kind regards
Andreas.
--
http://fam-tille.de
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