Re: Help for next version of freebayes needed: libseqlib build error

[Andreas Tille <andreas@an3as.eu>]

On Fri, Jan 27, 2017 at 02:51:27PM +0000, Ghislain Vaillant wrote:
> 
> Looks like the system BWA and FML have conflicting bseq1_t
> declaration. 
> 
> I noticed that upstream is using personal forks of BWA and FML, not the
> upstream ones. If you look for bseq1_t in the SeqLib clones of BWA and
> FML, no definition appears. However, they do appear in the respective
> upstream repositories.
> 
> Looks like upstream had to patch the BWA and FML code bases to be able
> to mix them without a multiple-definition error. I am not sure you can
> get away from it.

Thanks for the quick response.  I've opened

   https://github.com/walaj/SeqLib/issues/13
 
May be I might also address BWA and FML upstream - lets wait for a
response first.

Kind regards

      Andreas.

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