ITP: gatb-core -- The Genome Analysis Toolbox with de-Bruijn graph

[Nadiya Sitdykova <rovenskasa@gmail.com>]

Package: wnpp

Severity: wishlist

Owner: Debian Med <debian-med@lists.debian.org>

* Package name     : gatb-core

  Version                  : 1.3.0

* URL                       : https://github.com/GATB/gatb-core

* License                  : GPL3

  Programming Lang: C++

  Description             : The Genome Analysis Toolbox with de-Bruijn graph

The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/.

By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/

The package is relevant to the field of NGS analysis and will be maintained by the Debian Med Team.