Re: RRID update on salsa on packages starting with A+B
On 4/2/18 11:32 PM, Andreas Tille wrote:
Hi Steffen,
thanks a lot for your continuous work on assembling registry data.
On Sat, Mar 31, 2018 at 02:41:42AM +0200, Steffen Möller wrote:
There are still packages that are not updated. Worthwhile candidates
are
autodock
This has:
Registry:
- Name: OMICtools
Entry: NA
- Name: RRID
Entry: NA
- Name: bio.tools
Entry: NA
That is an interesting one. Please kindly check
https://salsa.debian.org/med-team/autodocksuite/blob/master/debian/upstream/metadata
which on my side shows
Registry:
- Name: OMICtools
Entry: OMICS_19997
- Name: SciCrunch
Entry: SCR_012746
- Name: bio.tools
Entry: AutoDock
I remember it was not your prefered solution but for the moment 'NA'
values are not stored. [...]
How would you like <strike>Name</strike> and no fancy colouring?
The idea was to inform the world (and ourselves) that we have checked.
The problem is that we are unlikely to be informed about an entry being
added to the registry, so we would look bad. But since the advent of
salsa.d.o I am tempted to risk that.
bio-express (https://salsa.debian.org/med-team/express)
It is rather berkeley-express. This works now[1]. The reason for the
problem was that the repository name is different from the source
package name. The importer was simply wrong for these cases. This is
fixed now (hopefully!) but we should definitely avoid this kind of
divergence and I'm tempted to adapt the repository name to the source
package name once we migrate anonscm.d.o to salsa.d.o (I've lost hope
for some sensible solution to keep anonscm working :-((().
Aaah. Yes. This sounds like a reasonable addition to the Debian Med policy.
Bio-eagle
Works now[2]. Same as above.
Thanks.
garli
Works (and as far as I can see it has also worked before - no idea why
it is on your list).
Most likely I did not wait long enough prior to reporting.
gdpc
Same here - just works.
gromacs
No Registry entries in d/upstream/metadata - so nothing to display here.
:o/ Because that is debichem and looked at my not-yet-merged own branch.
a problem for me to report them is that I am uncertain about the time that
needs
to be passed until the update is run. Could you please help with a little
line at the bottom alike:
This document is prepared every 24 hours for Debian packages selected in the
<a href="https://salsa.debian.org/blends-team/med/blob/master/tasks/bio";>Med
Bio Task Description</a> withinformation in the Ultimate Debian Database (<a
href="https://udd.debian.org";>UDD</a>).
The bottom line has a creation date of the web page. Currently it says:
Last update: Mon, 02 Apr 2018 19:21:37 -0000
Excellent. I have missed that one.
It was last updated at [Date+Time].
This information is not available, sorry.
I am uncertain about what "this" refers to, but maybe you have some idea
about who the page can explain itself to the ones who want to contribute
code or content.
The good part of the problem is that whenever I check if something was
updated, I'll add RRIDs to another package. This typically is from within
salsa. Is that possibly not triggering the same routines as when I push from
a remote-from-salsa repository?
There is no difference between pushing from remote repository and a web
interface edit.
Good.
Curious about this autodock/autodocksuite thingy and maybe there is some
chance to have this self-explaining bit at the end.
I have added registry links to about all green entries in bio now. Let
us review those over the next weeks a bit and then think about an
announcing it with the Debian News or whatever the list finds appropriate.
Best,
Steffen
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