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bcbio - kind of ready, but dependencies gffutils and pybedtools are no longer distributed



Hello,

I just finished what started at 2018 Sprint, i.e. the packaging of bcbio. Their december release builds without a patch and autotests with Python 3 are fine. I just uploaded 1.1.2 to salsa - please have a look. Now, running pbuilder I ran into missing packages for

https://tracker.debian.org/pkg/python-pybedtools
https://tracker.debian.org/pkg/python-gffutils

which in the meantime have been removed from the distribution. The source tree of bcbio makes strong direct use of them both. Can we have them back? There was no technical reason for these packages to disappear, right?

Best,

Steffen



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