Re: Finishing ncbi-vdb and sra-sdk
Andreas Tille <andreas@an3as.eu> writes:
> -- Could NOT find JNI (missing: JAVA_AWT_LIBRARY JAVA_AWT_INCLUDE_PATH).
>
> (which is probably caused at the end of file
> ngs/ncbi/ngs-jni/CMakeLists.txt )
More likely the find_package(Java ...) call on line 159 of
build/env.cmake. At any rate, it looks like CMake might want the full
(non-headless) JDK; I don't see an obvious way around that requirement
short of setting the relevant variables explicitly, so I'd suggest
keeping it simple and upgrading the build dependency.
> test/sharq/CMakeLists.txt:44 (ExternalProject_Add)
>
> -- Configuring incomplete, errors occurred!
>
> It seems the patch I tried[1] is not working as intended. :-(
Please try patching test/sharq in addition to tools/sharq.
--
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
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