Bug#1054657: Transition ready? (Was: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics))

[Andreas Tille <tille@debian.org>]

Hi Graham,

Am Sun, Dec 17, 2023 at 02:11:47PM -0100 schrieb Graham Inggs:
> There are some packages that have still not migrated since the
> previous r-api-bioc-3.17 transition in July 2023.
> 
> Links to their tracker pages, which should tell you what is needed, follow:
> 
> https://tracker.debian.org/pkg/r-bioc-cner

Fixed.

> https://tracker.debian.org/pkg/r-bioc-dada2
> https://tracker.debian.org/pkg/r-bioc-edaseq
> https://tracker.debian.org/pkg/r-bioc-ioniser

Due to shortread.

> https://tracker.debian.org/pkg/r-bioc-megadepth

d/tests/control has

   Architecture: !s390x

Why is it considered failing on s390x anyway?

> https://tracker.debian.org/pkg/r-bioc-scater

While this is an Architecture:all package it Depends from r-bioc-densvis
which exists only on amd64 and arm64 due to the Build-Depends:
r-bioc-basiklisk.  Thus tests on other architectures are failing since
r-bioc-densvis is not installable.  What solution do you suggest in this
case?

> https://tracker.debian.org/pkg/r-bioc-shortread

Fixed.

> https://tracker.debian.org/pkg/r-bioc-tcgabiolinks

Reported upstream ( https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/612 )

> https://tracker.debian.org/pkg/r-bioc-tfbstools

Due to cner which is fixed.
 
> As a bonus, here's another, not related to the transition, but from a
> similar time:
> https://tracker.debian.org/pkg/r-cran-dials

Forgot source-only upload - done.

Thanks a lot for the links

   Andreas.

-- 
http://fam-tille.de