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Bug#819674: marked as done (ITP: seer -- genomic sequence element (kmer) enrichment analysis)

Your message dated Sat, 02 Apr 2016 18:00:38 +0000
with message-id <E1amPqg-0006PW-N8@franck.debian.org>
and subject line Bug#819674: fixed in seer 1.1.0-1
has caused the Debian Bug report #819674,
regarding ITP: seer -- genomic sequence element (kmer) enrichment analysis
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
819674: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=819674
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : seer
  Version         : 1.1.0
  Upstream Author : John Lees <john@johnlees.me>
* URL             : https://github.com/johnlees/seer
* License         : GPL-2+
  Programming Lang: C++
  Description     : genomic sequence element (kmer) enrichment analysis
 Bacterial genomes vary extensively in terms of both gene content and
 gene sequence - this plasticity hampers the use of traditional SNP-based
 methods for identifying all genetic associations with phenotypic
 variation. SEER provides a computationally scalable and widely
 applicable statistical method for the identification of sequence
 elements that are significantly enriched in a phenotype of interest.
 SEER is applicable to even tens of thousands of genomes by counting variable-
 length k-mers using a distributed string-mining algorithm. Robust
 options are provided for association analysis that also correct for the
 clonal population structure of bacteria. Using large collections of
 genomes of the major human pathogen Streptococcus pneumoniae, SEER
 identifies relevant previously characterised resistance determinants for
 several antibiotics.


Remark: This package will be maintained by the Debian Med team at
     svn://anonscm.debian.org/debian-med/trunk/packages/seer/trunk/

--- End Message ---
--- Begin Message --- 
Source: seer
Source-Version: 1.1.0-1

We believe that the bug you reported is fixed in the latest version of
seer, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 819674@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated seer package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 31 Mar 2016 22:35:05 +0200
Source: seer
Binary: seer
Architecture: source amd64
Version: 1.1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 seer       - genomic sequence element (kmer) enrichment analysis
Closes: 819674
Changes:
 seer (1.1.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #819674)
Checksums-Sha1:
 e2d6eb37ab5102032b9cf15757d14ea0325381de 2002 seer_1.1.0-1.dsc
 55543e47082ffc5756fbb35e3bb83f69fc60d63d 122174 seer_1.1.0.orig.tar.gz
 ae1a5d19331dddd988658219bea4d4b2743f01ca 5580 seer_1.1.0-1.debian.tar.xz
 d018dd783c9994679c04ac5fe5171ecff9180cd4 6956562 seer-dbgsym_1.1.0-1_amd64.deb
 5784dec04e286cab90c7d624c79cc87560e0c572 372872 seer_1.1.0-1_amd64.deb
Checksums-Sha256:
 86def09739e6dc3ae5bfd447640ad71983e74c15142df7ec01b994a7a38c0759 2002 seer_1.1.0-1.dsc
 eab4ccba7374ea8b3e3b6c61eda81b8b84a3bc8642903fa92f279d9290f26510 122174 seer_1.1.0.orig.tar.gz
 da23cb5a430bd75946a0e13055d7df55f4a3b80427720ca0c1de1f4fa4c0f936 5580 seer_1.1.0-1.debian.tar.xz
 6b885d159d0ba0caf38060c681cc248adeea533c0ee9a0969071f3303e7201ae 6956562 seer-dbgsym_1.1.0-1_amd64.deb
 c08813cbd47f86860ec379873c17e120e7611ad1722e54e09bf3f02bf5bf90c7 372872 seer_1.1.0-1_amd64.deb
Files:
 11eeb1fd45c54b1e49d8d99de3c47a5c 2002 science optional seer_1.1.0-1.dsc
 6917ebbd25ea6479cdaccd1c3bbb45a8 122174 science optional seer_1.1.0.orig.tar.gz
 d6f52fb80a1bb7cf7f673874b7c81b60 5580 science optional seer_1.1.0-1.debian.tar.xz
 a73c45069f950e1b8cffa09f6c6458b0 6956562 debug extra seer-dbgsym_1.1.0-1_amd64.deb
 31f7dec3b47602f898c69f7cd0d44ae2 372872 science optional seer_1.1.0-1_amd64.deb

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