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Bug#820810: marked as done (ITP: art-nextgen-simulation-tools -- simulation tools to generate synthetic next-generation sequencing reads)

Your message dated Mon, 04 Jul 2016 08:00:19 +0000
with message-id <E1bJynj-0005LR-Sa@franck.debian.org>
and subject line Bug#820810: fixed in art-nextgen-simulation-tools 20160605+dfsg-1
has caused the Debian Bug report #820810,
regarding ITP: art-nextgen-simulation-tools -- simulation tools to generate synthetic next-generation sequencing reads
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
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-- 
820810: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=820810
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : art-nextgen-simulation-tools
  Version         : 3.19.15
  Upstream Author : Weichun Huang <whduke@gmail.com>
* URL             : http://www.niehs.nih.gov/research/resources/software/biostatistics/art/
* License         : GPL
  Programming Lang: C++
  Description     : simulation tools to generate synthetic next-generation sequencing reads
 ART is a set of simulation tools to generate synthetic next-generation
 sequencing reads. ART simulates sequencing reads by mimicking real
 sequencing process with empirical error models or quality profiles
 summarized from large recalibrated sequencing data. ART can also
 simulate reads using user own read error model or quality profiles. ART
 supports simulation of single-end, paired-end/mate-pair reads of three
 major commercial next-generation sequencing platforms: Illumina's
 Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to
 test or benchmark a variety of method or tools for next-generation
 sequencing data analysis, including read alignment, de novo assembly,
 SNP and structure variation discovery. ART was used as a primary tool
 for the simulation study of the 1000 Genomes Project . ART is
 implemented in C++ with optimized algorithms and is highly efficient in
 read simulation. ART outputs reads in the FASTQ format, and alignments
 in the ALN format. ART can also generate alignments in the SAM
 alignment or UCSC BED file format. ART can be used together with genome
 variants simulators (e.g. VarSim) for evaluating variant calling tools
 or methods.


Remark: The package is maintained by the Debian Med team at
   https://anonscm.debian.org/git/debian-med/art-nextgen-simulation-tools.git

--- End Message ---
--- Begin Message --- 
Source: art-nextgen-simulation-tools
Source-Version: 20160605+dfsg-1

We believe that the bug you reported is fixed in the latest version of
art-nextgen-simulation-tools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 820810@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated art-nextgen-simulation-tools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Sun, 03 Jul 2016 22:50:03 +0200
Source: art-nextgen-simulation-tools
Binary: art-nextgen-simulation-tools art-nextgen-simulation-tools-profiles
Architecture: source amd64 all
Version: 20160605+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 art-nextgen-simulation-tools - simulation tools to generate synthetic next-generation sequencing
 art-nextgen-simulation-tools-profiles - profiles for art simulation tools
Closes: 820810
Changes:
 art-nextgen-simulation-tools (20160605+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #820810)
Checksums-Sha1:
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 e4f435e236cb0191944c4ce23179ccb3df7a5216 8396 art-nextgen-simulation-tools_20160605+dfsg-1.debian.tar.xz
 d89d9b12e4bb71445e3616f2b7ba5fa0198abb6a 1305824 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-1_amd64.deb
 afb366414a3c985b37062ccba5386ddd7432abfa 1847232 art-nextgen-simulation-tools-profiles_20160605+dfsg-1_all.deb
 6796782d454334968e2d801560257350f2edaa08 1762846 art-nextgen-simulation-tools_20160605+dfsg-1_amd64.deb
Checksums-Sha256:
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 19f332f0b6e40c82e878a0af1b377e5900bdea7b370e3d65254d137b1bec89cd 8396 art-nextgen-simulation-tools_20160605+dfsg-1.debian.tar.xz
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Files:
 b6cbfe6baeac7bb2f21922ba7978c45a 2389 science optional art-nextgen-simulation-tools_20160605+dfsg-1.dsc
 a36db8dfaa4e93ad6e68a73b6a690746 2229112 science optional art-nextgen-simulation-tools_20160605+dfsg.orig.tar.xz
 5fe7d19be44d2ad6471590af06c3eced 8396 science optional art-nextgen-simulation-tools_20160605+dfsg-1.debian.tar.xz
 dde43d243e51548d2065407e260801b1 1305824 debug extra art-nextgen-simulation-tools-dbgsym_20160605+dfsg-1_amd64.deb
 043bd01cf40c288e9ae958d9e54332f2 1847232 science optional art-nextgen-simulation-tools-profiles_20160605+dfsg-1_all.deb
 ff16fbb6e270126932e64493827e0aea 1762846 science optional art-nextgen-simulation-tools_20160605+dfsg-1_amd64.deb

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