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Bug#859196: marked as done (ITP: pftools -- build and search protein and DNA generalized profiles)

Your message dated Thu, 06 Apr 2017 08:00:10 +0000
with message-id <E1cw2Kw-0005IB-27@fasolo.debian.org>
and subject line Bug#859196: fixed in pftools 3+dfsg-1
has caused the Debian Bug report #859196,
regarding ITP: pftools -- build and search protein and DNA generalized profiles
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
859196: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=859196
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : pftools
  Version         : 3
  Upstream Author : Alan Bridge, Christian Sigrist, Gregoire Rossier
* URL             : http://web.expasy.org/pftools/
* License         : GPL
  Programming Lang: C
  Description     : build and search protein and DNA generalized profiles
 The pftools package contains all the software necessary to build protein
 and DNA generalized profiles and use them to scan and align sequences,
 and search databases.
 .
 File formats used by the pftools
  * Generalized profiles format and syntax.
  * The multiple sequence alignment format (PSA).
  * The extended header multiple sequence alignment format (XPSA).
 .
 Programs to build generalized profiles
  pfmake
    Build a profile from a multiple sequence alignment.
  pfscale
    Fit parameters of an extreme-value distribution to a profile score list.
  pfw
    Weight sequences of a multiple sequence alignment to correct for
    sampling bias.
 .
 Programs to search with generalized profiles
  pfsearch
    Search a protein or DNA sequence library for sequence segments matching
    a profile.
  pfscan
    Scan a protein or DNA sequence with a profile library
 .
 Conversion programs
  psa2msa
    Reformat PSA file to Pearson/Fasta multiple sequence alignment file.
  ptof
    Convert a protein profile into a frame-search profile to search DNA
    sequences. To be used with 2ft.
  2ft
    Converts both strands of DNA into so-called interleaved
    frame-translated DNA sequences to search with protein profiles. To be
    used with ptof.
  6ft
    Translates all six reading frames of a double-stranded DNA sequence
    into individual protein sequences.
  pfgtop
    Convert a profile in GCG format into PROSITE format.
  pfhtop
    Convert a HMMER1 ASCII-formatted HMM into an equivalent PROSITE profile.
  ptoh
    Converts a generalized profile into an approximately equivalent HMM
    profile in HMMER1 format (can be read by the hmmconvert program from
    the HMMER2 package).


Remark: This package will be maintained by the Debian Med team at

     https://anonscm.debian.org/git/debian-med/pftools.git

--- End Message ---
--- Begin Message --- 
Source: pftools
Source-Version: 3+dfsg-1

We believe that the bug you reported is fixed in the latest version of
pftools, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 859196@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated pftools package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 31 Mar 2017 14:01:39 +0200
Source: pftools
Binary: pftools
Architecture: source amd64
Version: 3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 pftools    - build and search protein and DNA generalized profiles
Closes: 859196
Changes:
 pftools (3+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #859196)
Checksums-Sha1:
 7ef4a55e9ec424817a77ce1ec8d2162e1f93b357 1997 pftools_3+dfsg-1.dsc
 4610bf5c8d8f6b964611580cd314581ea40c413d 265880 pftools_3+dfsg.orig.tar.xz
 d05a2566e188da7f75d62854f34258eb6c3ce556 14104 pftools_3+dfsg-1.debian.tar.xz
 477d2da39a9d67d8d35ab2df729f4425b4373276 495520 pftools-dbgsym_3+dfsg-1_amd64.deb
 9e51221039b7f310bc17a9ee1db17f1b27fbe8b8 5741 pftools_3+dfsg-1_amd64.buildinfo
 d6571430ab087b3ee287b08867130b10e00818c6 392990 pftools_3+dfsg-1_amd64.deb
Checksums-Sha256:
 8543bc687bfed79a5fd19f4925a46291e053801da4692e9f013abce0e344c0f2 1997 pftools_3+dfsg-1.dsc
 67580e2bb562ffc173453d15c7741cc16fdca0360429b60a47bd82b4d1493965 265880 pftools_3+dfsg.orig.tar.xz
 24597019c166632d32545fbe8f99e62366204086f57083f301e90e8b1c356e35 14104 pftools_3+dfsg-1.debian.tar.xz
 5790c04e578f710f1514ca9dd29a533483b04cf69a084b1cd7dd9217b29ec5ef 495520 pftools-dbgsym_3+dfsg-1_amd64.deb
 0996328e4fa29d5e289f818b67aab3876e40510c11341d05a6f56351ab2b6102 5741 pftools_3+dfsg-1_amd64.buildinfo
 413ded29863f79d28738d73004ab08a351edfc5d9912aa8820433a5c2caf187c 392990 pftools_3+dfsg-1_amd64.deb
Files:
 c4a77226c340c767b087a63c87446d66 1997 science optional pftools_3+dfsg-1.dsc
 d027d3d05904b1af801c0d9e8e36d611 265880 science optional pftools_3+dfsg.orig.tar.xz
 ac118c0dd80f776d0a9453f919652335 14104 science optional pftools_3+dfsg-1.debian.tar.xz
 28b1e2eb08954aceac8d8b82fa6e849a 495520 debug extra pftools-dbgsym_3+dfsg-1_amd64.deb
 0b3b156c19254e47e21abba660abfeff 5741 science optional pftools_3+dfsg-1_amd64.buildinfo
 73294a3f5304b0c997b77a61506ce148 392990 science optional pftools_3+dfsg-1_amd64.deb

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--- End Message ---
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