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Bug#962790: marked as done (ITP: python-pairix -- 1D/2D indexing and querying with a pair of genomic coordinates)

Your message dated Mon, 02 Nov 2020 23:00:11 +0000
with message-id <E1kZio7-000D5u-Tp@fasolo.debian.org>
and subject line Bug#962790: fixed in python-pairix 0.3.7-1
has caused the Debian Bug report #962790,
regarding ITP: python-pairix -- 1D/2D indexing and querying with a pair of genomic coordinates
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
962790: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962790
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist

Subject: ITP: python-pairix -- 1D/2D indexing and querying with a pair of genomic coordinates
Package: wnpp
Owner: Andreas Tille <tille@debian.org>
Severity: wishlist

* Package name    : python-pairix
  Version         : 0.3.7
  Upstream Author : Soo Lee
* URL             : https://github.com/4dn-dcic/pairix
* License         : MIT
  Programming Lang: C
  Description     : 1D/2D indexing and querying with a pair of genomic coordinates
 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-pairix

--- End Message ---
--- Begin Message --- 
Source: python-pairix
Source-Version: 0.3.7-1
Done: Andreas Tille <tille@debian.org>

We believe that the bug you reported is fixed in the latest version of
python-pairix, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 962790@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated python-pairix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 14 Jun 2020 08:37:25 +0200
Source: python-pairix
Binary: python-pairix-examples python3-pairix python3-pairix-dbgsym
Architecture: source all amd64
Version: 0.3.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 python-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e
 python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates
Closes: 962790
Changes:
 python-pairix (0.3.7-1) unstable; urgency=medium
 .
   * Initial release (Closes: #962790)
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--- End Message ---
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