Bug#991862: ITP: shark -- Mapping-free filtering of useless RNA-Seq reads
Package: wnpp
Severity: wishlist
Subject: ITP: shark -- Mapping-free filtering of useless RNA-Seq reads
Package: wnpp
Owner: Steffen Moeller <moeller@debian.org>
Severity: wishlist
* Package name : shark
Version : 1.2.0
Upstream Author : Copyright:2019 Tamara Ceccato, Luca Denti, Yuri Pirola, Marco Previtali
* URL : https://algolab.github.io/shark/
* License : GPL-3.0+
Programming Lang: C
Description : Mapping-free filtering of useless RNA-Seq reads
For RNA-seq, to determine the identity of a gene that is described
by a read, one maps it against a reference genome. Now, such may
not be available, or one has an special variant that would make it
too lossy to perform the mapping. This tool allows to filter for
those reads that have a redundancy between themselves, i.e. that
occur more frequently and are hence likely to be meaningful for
subsequent comparisons.
Remark: This package is maintained by Steffen Moeller at
https://salsa.debian.org/debian/shark
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