[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#1012045: marked as done (ITP: lamassemble -- Merges overlapping "long" DNA reads into a consensus sequences)

Your message dated Thu, 09 Jun 2022 18:00:13 +0000
with message-id <E1nzMS5-000Hmg-MB@fasolo.debian.org>
and subject line Bug#1012045: fixed in lamassemble 1.4.2-1
has caused the Debian Bug report #1012045,
regarding ITP: lamassemble -- Merges overlapping "long" DNA reads into a consensus sequences
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
1012045: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1012045
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: nilesh@posteo.net, nilesh@posteo.in, nilesh@riseup.net

Subject: ITP: lamassemble -- Merges overlapping "long" DNA reads into a consensus sequences
Package: wnpp
Owner: Nilesh Patra <nilesh@debian.org>
Severity: wishlist

* Package name    : lamassemble
  Version         : 1.4.2
  Upstream Author : Martin Frith
* URL             : https://gitlab.com/mcfrith/lamassemble
* License         : Expat
  Programming Lang: Python
  Description     : Merges overlapping "long" DNA reads into a consensus sequences
 lamassemble merges overlapping "long" DNA reads into a consensus
 sequence (i.e. assembles them). It works OK when the number of reads
 is less than a thousand or so.
 The merging is not always accurate. In particular, if the reads come
 from huge tandem repeats, wrong parts of the reads may get merged.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/lamassemble

--- End Message ---
--- Begin Message --- 
Source: lamassemble
Source-Version: 1.4.2-1
Done: Nilesh Patra <nilesh@debian.org>

We believe that the bug you reported is fixed in the latest version of
lamassemble, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1012045@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nilesh@debian.org> (supplier of updated lamassemble package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 29 May 2022 15:27:22 +0530
Source: lamassemble
Binary: lamassemble
Architecture: source amd64
Version: 1.4.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
 lamassemble - Merges overlapping "long" DNA reads into a consensus sequences
Closes: 1012045
Changes:
 lamassemble (1.4.2-1) unstable; urgency=medium
 .
   * Initial release (Closes: #1012045)
Checksums-Sha1:
 8b9d4e0045e8edb5e8ac8af946958aa3f68e373e 2074 lamassemble_1.4.2-1.dsc
 97069a5b3c3499d31400fcedad64c1eb95cc2eeb 25078 lamassemble_1.4.2.orig.tar.gz
 ac68535da4d46176c58bcd98cb5373d093fc34dd 95552 lamassemble_1.4.2-1.debian.tar.xz
 3e3ce0aa94cbe710ed446937b78ee9cf2f381111 6706 lamassemble_1.4.2-1_amd64.buildinfo
 133326a0c18d213dc04b79a52af64ab2ec890131 104308 lamassemble_1.4.2-1_amd64.deb
Checksums-Sha256:
 aea06c2a2f3dd115df18008fd1800c7df20457a3d14b648a3cf1215fb606aacd 2074 lamassemble_1.4.2-1.dsc
 324542d4c9426ba8c0918a3fd99bb30ced5169e172eae655b175fc0b19cceffa 25078 lamassemble_1.4.2.orig.tar.gz
 dd9f8b84caba1137a27b3ebcfb714e3188c7a69783272cbe5c4f5e5e885578ec 95552 lamassemble_1.4.2-1.debian.tar.xz
 ef62324094e38853d872a75bb96f49bedd49af14e1fb3981b84d32814c9a9eaa 6706 lamassemble_1.4.2-1_amd64.buildinfo
 fa5d911ac94b0940be31f31dd025e4eba84475fc7e11fc7f6340c91102f0d51f 104308 lamassemble_1.4.2-1_amd64.deb
Files:
 5b36c029b44b19427c65596c177093b5 2074 science optional lamassemble_1.4.2-1.dsc
 26aac8a18cb1aa0d96e835c140e2ffa4 25078 science optional lamassemble_1.4.2.orig.tar.gz
 d5cb3fdf923e6098fbbbdd2afb8d617b 95552 science optional lamassemble_1.4.2-1.debian.tar.xz
 691926f267f7481125a01f81010c0e38 6706 science optional lamassemble_1.4.2-1_amd64.buildinfo
 60a44de37f3345e06fefc77b1b34c371 104308 science optional lamassemble_1.4.2-1_amd64.deb

-----BEGIN PGP SIGNATURE-----
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=6W/x
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: