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Bug#1014647: marked as done (ITP: abpoa -- adaptive banded Partial Order Alignment)

Your message dated Sat, 23 Jul 2022 18:09:34 +0000
with message-id <E1oFJZG-000Diz-Vx@fasolo.debian.org>
and subject line Bug#1014647: fixed in abpoa 1.4.1-1
has caused the Debian Bug report #1014647,
regarding ITP: abpoa -- adaptive banded Partial Order Alignment
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
1014647: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1014647
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Étienne Mollier <emollier@debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org

* Package name    : abpoa
  Version         : 1.4.1
  Upstream Author : Yan Gao <gaoy1@chop.edu>
* URL             : https://github.com/yangao07/abPOA
* License         : Expat
  Programming Lang: C, Python3
  Description     : adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.


This package is necessary as a new dependency for newer versions
of the parsnp package, and may be useful in other areas.  I plan
to maintain it within the Debian Med team.  A stub of packaging
repository is already available on Salsa[1].

[1]: https://salsa.debian.org/med-team/abpoa

Have a nice day,  :)
-- 
Étienne Mollier <emollier@emlwks999.eu>
Fingerprint:  8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
Sent from /dev/pts/9, please excuse my verbosity.
On air: Cairo (US) - The Fuse

Attachment: signature.asc
Description: PGP signature


--- End Message ---
--- Begin Message --- 
Source: abpoa
Source-Version: 1.4.1-1
Done: Étienne Mollier <emollier@debian.org>

We believe that the bug you reported is fixed in the latest version of
abpoa, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1014647@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <emollier@debian.org> (supplier of updated abpoa package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sat, 09 Jul 2022 19:26:20 +0200
Binary: abpoa abpoa-dbgsym python3-pyabpoa python3-pyabpoa-dbgsym
Source: abpoa
Architecture: amd64 source
Version: 1.4.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Closes: 1014647
Description: 
 abpoa      - adaptive banded Partial Order Alignment
 python3-pyabpoa - adaptive banded Partial Order Alignment - python3 module
Changes:
 abpoa (1.4.1-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #1014647)
Checksums-Sha1: 
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 d11e785505ae957bbd010d4961d8ed6207cf7e4b 195608 abpoa_1.4.1.orig.tar.gz
 fb9ce5e295c5edd5218a6f8a00245be649a5266f 7152 abpoa_1.4.1-1.debian.tar.xz
 56bf339e3e006234c3da06cfaf2ef0f16e8f890c 1692072 abpoa-dbgsym_1.4.1-1_amd64.deb
 50a610cf3b15d880d787d5d2f87d33eb4f5069f4 9765 abpoa_1.4.1-1_amd64.buildinfo
 49b823a86aa33114cf1f333c5d163cb12fbdb0f7 237428 abpoa_1.4.1-1_amd64.deb
 6039d2689f6f578580655e8e116fbfd8e75f2ffa 1013052 python3-pyabpoa-dbgsym_1.4.1-1_amd64.deb
 17cb2b0510e680a5fcfc60854317b5ce8f4b3e10 169316 python3-pyabpoa_1.4.1-1_amd64.deb
Checksums-Sha256: 
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 b16b58e260026dd7daa75cea46c75e7c418cc1b1c681dd864d37d925157dd677 195608 abpoa_1.4.1.orig.tar.gz
 2d0c27e9133ebfba237916fc6efba008f64a40bdced131403b179bde39b0aaca 7152 abpoa_1.4.1-1.debian.tar.xz
 63d7fa46ef565f42b5765a2f26e871b6db547750d690a897f988c207144377d4 1692072 abpoa-dbgsym_1.4.1-1_amd64.deb
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 fe0e97730135a05884d623d2bfc7b7f9f519e75203e96f2e235ae45bf3f3a147 169316 python3-pyabpoa_1.4.1-1_amd64.deb
Files: 
 20e14e5e75cf75205812a6a27d284888 2106 science optional abpoa_1.4.1-1.dsc
 ddf73a1c15032ded89c33b30cf48352b 195608 science optional abpoa_1.4.1.orig.tar.gz
 f4d3b35f524be6da6149f515c6d08dd7 7152 science optional abpoa_1.4.1-1.debian.tar.xz
 f804f60a5501a515422c2893bc946820 1692072 debug optional abpoa-dbgsym_1.4.1-1_amd64.deb
 ee14364292e07ad2f3aa3d0fa717b779 9765 science optional abpoa_1.4.1-1_amd64.buildinfo
 2f1205aae957311131f635d5f8e3d138 237428 science optional abpoa_1.4.1-1_amd64.deb
 f5a8e419f177e4df3ccde63511517c37 1013052 debug optional python3-pyabpoa-dbgsym_1.4.1-1_amd64.deb
 92c421128829297adff6104b8c8726ad 169316 python optional python3-pyabpoa_1.4.1-1_amd64.deb

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--- End Message ---
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