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Bug#861736: marked as done (python-nxs: Cannot save files with nxs python module)

Your message dated Thu, 11 May 2017 09:08:53 +0000
with message-id <E1d8k5d-000Ham-BY@fasolo.debian.org>
and subject line Bug#861736: fixed in nexus 4.3.2-svn1921-5
has caused the Debian Bug report #861736,
regarding python-nxs: Cannot save files with nxs python module
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
861736: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=861736
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 

Package: python-nxs
Version: 4.3.2-svn1921-4
Severity: grave
Justification: renders package unusable

Dear Maintainer,

   * What led up to the situation?

   Run the following python code:

   import nxs
   e = nxs.NXentry(name= "NXtomo")
   e.save("filenamenxs.h5", 'w5')


   * What was the outcome of this action?

   Got the following exception:

NeXusError
Traceback (most recent call last)
<ipython-input-3-05b94b04d656> in <module>()
----> 1 e.save("filenamenxs.h5", 'w5')
/usr/lib/python2.7/dist-packages/nxs/tree.pyc in save(self, filename, format) 
    866                 root = NXroot(NXentry(self))
    867             if root.nxfile: root.nxfile.close()
--> 868             file = NeXusTree(filename, format)
    869             file.writefile(root)
    870             file.close()
/usr/lib/python2.7/dist-packages/nxs/napi.pyc in __init__(self, filename, mode) 
    318             else:
    319                 op = 'create'
--> 320             raise NeXusError, "Could not %s %s"%(op,filename)
    321         self.isopen = True
    322


   * What outcome did you expect instead?

An hdf5 file filenamenxs.h5 saved with no exception.

Note: Tried this with debian:stable docker and it worked correctly.


-- System Information:
Debian Release: 9.0
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: amd64
 (x86_64)

Kernel: Linux 4.9.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Init: systemd (via /run/systemd/system)

Versions of packages python-nxs depends on:
ii  libnexus0v5  4.3.2-svn1921-4+b1
pn  python:any   <none>

python-nxs recommends no packages.

python-nxs suggests no packages.

-- no debconf information

--- End Message ---
--- Begin Message --- 
Source: nexus
Source-Version: 4.3.2-svn1921-5

We believe that the bug you reported is fixed in the latest version of
nexus, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 861736@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <tille@debian.org> (supplier of updated nexus package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 11 May 2017 09:23:17 +0200
Source: nexus
Binary: libnexus0v5 libnexus0-dev libnexus0-java python-nxs nexus-tools
Architecture: source amd64 all
Version: 4.3.2-svn1921-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libnexus0-dev - NeXus scientific data file format - development libraries
 libnexus0-java - NeXus scientific data file format - java libraries
 libnexus0v5 - NeXus scientific data file format - runtime libraries
 nexus-tools - NeXus scientific data file format - applications
 python-nxs - NeXus scientific data file format - python binding
Closes: 861736
Changes:
 nexus (4.3.2-svn1921-5) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Andreas Tille ]
   * Take over package into Debian Science team
   * Fix wrong Priority: extra -> optional
   * Add watch file
   * Add Homepage field
 .
   [ Gilles Filippini ]
   * New patch hdf5-1.10-support.patch to fix incorrect type for HDF5
     handles: should be hid_t instead of int (closes: #861736)
Checksums-Sha1:
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 d40f689c979de8818e1c0df37cc858f9b60f2ae7 128170 libnexus0-dev_4.3.2-svn1921-5_amd64.deb
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 6b089277cb3b449eb3ba9e321310e6ddba1f7112 405900 nexus-tools_4.3.2-svn1921-5_amd64.deb
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 41579d4a32b50d46f04369b64cae32ff70ef51902b3e521d77bfc9af12c81484 128170 libnexus0-dev_4.3.2-svn1921-5_amd64.deb
 c4b5c20cbc4501ab66fe382f1309fb17577ba3b8557d3a9d42d4eec187b9d460 46062 libnexus0-java-dbgsym_4.3.2-svn1921-5_amd64.deb
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 cb4f6e5778e819d1200fa172783f1c0581b070f11a51213c8ddc84476e0e6ee4 405900 nexus-tools_4.3.2-svn1921-5_amd64.deb
 4d95c02c08fa10be6608ee48e71c1256e5268b98269f9e82e37cd9462d9d4a2d 12551 nexus_4.3.2-svn1921-5_amd64.buildinfo
 93d74135e39ca5c878c55e8635d57411267e9dd06cbef4845dcdb2ae75c4011b 44586 python-nxs_4.3.2-svn1921-5_all.deb
Files:
 e11aec9553f1f6ae62757e85e918d012 2341 libs optional nexus_4.3.2-svn1921-5.dsc
 16b991a661f03cf0593fd384294d7d44 8388 libs optional nexus_4.3.2-svn1921-5.debian.tar.xz
 3b273a30c56a1fde86471cc165ade664 128170 libdevel optional libnexus0-dev_4.3.2-svn1921-5_amd64.deb
 f2c6bd2a7d7dfc1e2f4e3660d8bf2212 46062 debug extra libnexus0-java-dbgsym_4.3.2-svn1921-5_amd64.deb
 7dd633d1cce1410b82306b49e345e3b1 38008 java optional libnexus0-java_4.3.2-svn1921-5_amd64.deb
 b607315e1b4f4481115466e15c1598ef 597046 debug extra libnexus0v5-dbgsym_4.3.2-svn1921-5_amd64.deb
 c2bb43ffbfe9cbac28c7d2251e6b1ff7 96260 libs optional libnexus0v5_4.3.2-svn1921-5_amd64.deb
 d34414159a2fa3a42268d8d0ec62279c 4265432 debug extra nexus-tools-dbgsym_4.3.2-svn1921-5_amd64.deb
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 b181616eb77142b1c711010ca98d6c8c 12551 libs optional nexus_4.3.2-svn1921-5_amd64.buildinfo
 809424bb5a605428e90d0b55951ebeef 44586 python optional python-nxs_4.3.2-svn1921-5_all.deb

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--- End Message ---
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