Package: parsnp (2.0.5+dfsg-1)
Links for parsnp
Debian Resources:
Download Source Package parsnp:
Maintainers:
External Resources:
- Homepage [harvest.readthedocs.org]
Similar packages:
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
Other Packages Related to parsnp
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also a virtual package provided by libc6-udeb
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- dep: libc6.1 (>= 2.34) [alpha]
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- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]
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- dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
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- dep: libgomp1 (>= 6)
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Download parsnp
Architecture | Package Size | Installed Size | Files |
---|---|---|---|
alpha (unofficial port) | 206.3 kB | 2,012.0 kB | [list of files] |
amd64 | 200.9 kB | 1,947.0 kB | [list of files] |
arm64 | 191.2 kB | 1,947.0 kB | [list of files] |
armel | 187.0 kB | 1,906.0 kB | [list of files] |
armhf | 182.4 kB | 1,826.0 kB | [list of files] |
hppa (unofficial port) | 200.5 kB | 1,916.0 kB | [list of files] |
i386 | 200.6 kB | 1,942.0 kB | [list of files] |
ia64 (unofficial port) | 256.9 kB | 2,246.0 kB | [list of files] |
m68k (unofficial port) | 191.5 kB | 1,930.0 kB | [list of files] |
mips64el | 203.2 kB | 2,022.0 kB | [list of files] |
ppc64 (unofficial port) | 209.2 kB | 2,011.0 kB | [list of files] |
ppc64el | 212.7 kB | 2,011.0 kB | [list of files] |
riscv64 | 219.4 kB | 1,883.0 kB | [list of files] |
s390x | 184.6 kB | 1,947.0 kB | [list of files] |
sh4 (unofficial port) | 227.6 kB | 1,947.0 kB | [list of files] |
sparc64 (unofficial port) | 182.8 kB | 2,655.0 kB | [list of files] |
x32 (unofficial port) | 202.9 kB | 1,930.0 kB | [list of files] |