[ Source: cyvcf2 ]
Package: python3-cyvcf2 (0.31.0-1 and others)
Links for python3-cyvcf2
Debian Resources:
Download Source Package cyvcf2:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Liubov Chuprikova (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
VCF parser based on htslib (Python 3)
This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.
cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.
This package installs the library for Python 3.
Other Packages Related to python3-cyvcf2
|
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.7) [not alpha, amd64, arm64, ia64, ppc64el, riscv64, sh4, x32]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.7) [alpha]
-
- dep: libhts3 (>= 1.10) [x32]
- C library for high-throughput sequencing data formats
-
- dep: libhts3t64 (>= 1.17) [not x32]
- C library for high-throughput sequencing data formats
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.12) [x32]
- dep: python3 (<< 3.13) [not x32]
- dep: python3 (>= 3.11~)
-
- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
-
- dep: python3-coloredlogs
- colored terminal output for Python 3's logging module
-
- dep: python3-numpy (>= 1:1.22.0) [x32]
- Fast array facility to the Python language (Python 3)
- dep: python3-numpy (>= 1:1.25.0) [not x32]
-
- dep: python3-numpy-abi9
- virtual package provided by python3-numpy
Download python3-cyvcf2
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 0.31.0-1 | 934.5 kB | 5,723.0 kB | [list of files] |
| amd64 | 0.31.0-1 | 983.1 kB | 5,498.0 kB | [list of files] |
| arm64 | 0.31.0-1 | 923.9 kB | 5,460.0 kB | [list of files] |
| armel | 0.31.0-1 | 923.5 kB | 5,332.0 kB | [list of files] |
| armhf | 0.31.0-1 | 933.7 kB | 4,980.0 kB | [list of files] |
| hppa (unofficial port) | 0.31.0-1 | 942.9 kB | 5,944.0 kB | [list of files] |
| i386 | 0.31.0-1 | 985.0 kB | 5,558.0 kB | [list of files] |
| ia64 (unofficial port) | 0.30.28-1+b1 | 1,027.9 kB | 6,797.0 kB | [list of files] |
| m68k (unofficial port) | 0.31.0-1 | 584.7 kB | 4,328.0 kB | [list of files] |
| mips64el | 0.31.0-1 | 883.1 kB | 5,556.0 kB | [list of files] |
| ppc64 (unofficial port) | 0.31.0-1 | 953.7 kB | 5,908.0 kB | [list of files] |
| ppc64el | 0.31.0-1 | 962.7 kB | 5,780.0 kB | [list of files] |
| riscv64 | 0.31.0-1 | 977.5 kB | 5,192.0 kB | [list of files] |
| s390x | 0.31.0-1 | 946.9 kB | 5,500.0 kB | [list of files] |
| sh4 (unofficial port) | 0.31.0-1 | 740.8 kB | 4,242.0 kB | [list of files] |
| sparc64 (unofficial port) | 0.31.0-1 | 886.2 kB | 6,242.0 kB | [list of files] |
| x32 (unofficial port) | 0.30.22-1 | 790.1 kB | 4,649.0 kB | [list of files] |