[ Source: htslib ]
Package: tabix (1.20+ds-1 and others)
Links for tabix
Debian Resources:
Download Source Package htslib:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Charles Plessy (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Steffen Moeller (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.
This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.
Other Packages Related to tabix
|
|
|
|
-
- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
-
- dep: libc6 (>= 2.34) [not alpha, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: libdeflate0 (>= 1.0)
- fast, whole-buffer DEFLATE-based compression and decompression
-
- dep: libhtscodecs2 (>= 1.3.0)
- Custom compression for CRAM and others
-
- dep: liblzma5 (>= 5.1.1alpha+20120614)
- XZ-format compression library
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download tabix
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.20+ds-1 | 478.0 kB | 2,700.0 kB | [list of files] |
| amd64 | 1.20+ds-1 | 471.4 kB | 2,249.0 kB | [list of files] |
| arm64 | 1.20+ds-1 | 438.8 kB | 2,249.0 kB | [list of files] |
| armel | 1.20+ds-1 | 401.4 kB | 2,062.0 kB | [list of files] |
| armhf | 1.20+ds-1 | 404.8 kB | 1,494.0 kB | [list of files] |
| hppa (unofficial port) | 1.20+ds-1 | 461.7 kB | 2,282.0 kB | [list of files] |
| i386 | 1.20+ds-1 | 517.3 kB | 2,566.0 kB | [list of files] |
| ia64 (unofficial port) | 1.19+ds-1.1+b1 | 558.6 kB | 4,599.0 kB | [list of files] |
| m68k (unofficial port) | 1.20+ds-1 | 435.0 kB | 2,078.0 kB | [list of files] |
| mips64el | 1.20+ds-1 | 430.6 kB | 2,618.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.20+ds-1 | 494.7 kB | 3,145.0 kB | [list of files] |
| ppc64el | 1.20+ds-1 | 508.1 kB | 3,017.0 kB | [list of files] |
| riscv64 | 1.20+ds-1 | 488.8 kB | 1,893.0 kB | [list of files] |
| s390x | 1.20+ds-1 | 462.5 kB | 2,465.0 kB | [list of files] |
| sh4 (unofficial port) | 1.20+ds-1 | 493.9 kB | 1,993.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.20+ds-1 | 402.4 kB | 3,160.0 kB | [list of files] |
| x32 (unofficial port) | 1.20+ds-1 | 473.0 kB | 2,198.0 kB | [list of files] |