[ Source: jellyfish ]
Package: jellyfish (2.3.0-15 and others)
Links for jellyfish
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
Other Packages Related to jellyfish
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libjellyfish-2.0-2 (= 2.3.0-15+b3)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
Download jellyfish
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.3.0-15+b3 | 770.4 kB | 2,475.0 kB | [list of files] |
| arm64 | 2.3.0-15+b3 | 688.6 kB | 2,379.0 kB | [list of files] |
| armel | 2.3.0-15+b3 | 636.7 kB | 1,849.0 kB | [list of files] |
| armhf | 2.3.0-15+b3 | 661.8 kB | 1,433.0 kB | [list of files] |
| i386 | 2.3.0-15+b3 | 754.7 kB | 2,261.0 kB | [list of files] |
| mips64el | 2.3.0-15+b3 | 650.1 kB | 3,144.0 kB | [list of files] |
| ppc64el | 2.3.0-15+b3 | 734.9 kB | 2,955.0 kB | [list of files] |