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[ Source: spaln  ]

Package: spaln (2.4.13f+dfsg-1)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 338.7 kB821.0 kB [list of files]
arm64 304.6 kB835.0 kB [list of files]
mips64el 323.1 kB1,047.0 kB [list of files]
ppc64el 353.4 kB1,092.0 kB [list of files]
s390x 341.4 kB954.0 kB [list of files]