[ Source: stacks ]
Package: stacks (2.66+dfsg-1 and others)
Links for stacks
Debian Resources:
Download Source Package stacks:
Maintainers:
External Resources:
- Homepage [creskolab.uoregon.edu]
Similar packages:
pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>
Other Packages Related to stacks
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- dep: bsdextrautils
- extra utilities from 4.4BSD-Lite
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libdbi-perl
- Perl Database Interface (DBI)
-
- dep: libgcc-s1 (>= 3.0) [not armel, armhf, ppc64el]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
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- rec: libspreadsheet-writeexcel-perl
- module to create Excel spreadsheets
-
- rec: littler
- GNU R scripting and command-line front-end -- transition package
also a virtual package provided by r-cran-littler
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- sug: gdb
- GNU Debugger
also a virtual package provided by gdb-minimal
Download stacks
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 2.66+dfsg-1+b1 | 1,154.6 kB | 5,807.0 kB | [list of files] |
| arm64 | 2.66+dfsg-1+b1 | 1,004.8 kB | 5,725.0 kB | [list of files] |
| armel | 2.66+dfsg-1+b1 | 979.6 kB | 5,148.0 kB | [list of files] |
| armhf | 2.66+dfsg-1+b1 | 1,000.0 kB | 3,632.0 kB | [list of files] |
| i386 | 2.66+dfsg-1+b1 | 1,233.2 kB | 6,100.0 kB | [list of files] |
| mips64el | 2.66+dfsg-1+b1 | 1,062.3 kB | 7,443.0 kB | [list of files] |
| ppc64el | 2.66+dfsg-1+b1 | 1,123.6 kB | 7,005.0 kB | [list of files] |
| s390x | 2.66+dfsg-1+b1 | 1,104.7 kB | 6,049.0 kB | [list of files] |